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ASM1832425v1

Organism name:
Polymorphospora rubra (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: NBRC 101157
BioSample:
SAMD00219692
BioProject:
PRJDB9581
Submitter:
Biological Resource Center, National Institute of Technology and Evaluation (NBRC)
Date:
2021/04/01
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_018324255.1 (latest)
RefSeq assembly accession:
GCF_018324255.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.4
Genome coverage:
196x
Sequencing technology:
SMRT cell 8 Pac V3

IDs: 10026231 [UID] 26659448 [GenBank] 26725868 [RefSeq]

See Genome Information for Polymorphospora rubra

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at DFAST https://dfast.nig.ac.jp/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/07/2023 05:26:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::7,348
CDSs (total)::7,273
Genes (coding)::6,958
CDSs (with protein)::6,958
Genes (RNA)::75
rRNAs::3, 3, 3 (5S, 16S, 23S)
complete rRNAs::3, 3, 3 (5S, 16S, 23S)
tRNAs::63
ncRNAs::3
Pseudo Genes (total)::315
CDSs (without protein)::315
Pseudo Genes (ambiguous residues)::0 of 315
Pseudo Genes (frameshifted)::198 of 315
Pseudo Genes (incomplete)::140 of 315
Pseudo Genes (internal stop)::4 of 315
Pseudo Genes (multiple problems)::24 of 315
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,365,212
Total ungapped length8,365,212
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_018324265.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP023359.1=NZ_AP023359.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,365,212

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Polymorphospora rubraPolymorphospora rubra

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001567585.1Micromonospora rosariatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type84.3219.1021.64

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna