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Source database (GenBank or RefSeq) File type

ASM1832404v1

Organism name:: Klebsiella variicola (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: JCM 12419
BioSample:: SAMD00294603
BioProject:: PRJDB11476
Submitter:: RIKEN, BDR
Date:: 2021/04/22
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from synonym type material
GenBank assembly accession:: GCA_018324045.1 (latest)
RefSeq assembly accession:: GCF_018324045.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: Unicycler v. 0.4.9-beta
Genome coverage:: 200x
Sequencing technology:: Illumina MiSeq; ONT MinION

IDs: 10026121 [UID] 26659228 [GenBank] 26725788 [RefSeq]

See Genome Information for Klebsiella variicola

Pathogen Detection Resources

There are 1694 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_018324045.1	=	GCF_018324045.1	ASM1832404v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotated at DFAST https://dfast.nig.ac.jp/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::01/10/2024 02:10:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,572
CDSs (total)::5,450
Genes (coding)::5,342
CDSs (with protein)::5,342
Genes (RNA)::122
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::86
ncRNAs::11
Pseudo Genes (total)::108
CDSs (without protein)::108
Pseudo Genes (ambiguous residues)::0 of 108
Pseudo Genes (frameshifted)::46 of 108
Pseudo Genes (incomplete)::61 of 108
Pseudo Genes (internal stop)::29 of 108
Pseudo Genes (multiple problems)::25 of 108
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,732,600
Total ungapped length	5,732,600
Total number of chromosomes and plasmids	3

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	AP024592.1	=	NZ_AP024592.1
Plasmid pKLVA-1	AP024593.1	=	NZ_AP024593.1
Plasmid pKLVA-2	AP024594.1	=	NZ_AP024594.1

Molecule	Total Length
All	5,732,600
Chromosome	5,564,085
Plasmid pKLVA-1	163,252
Plasmid pKLVA-2	5,263

	ANI	Query coverage	Subject coverage
Declared type	99.19	91.24	94.73
Best-match type	99.19	91.24	94.73

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ASM1832404v1

See Genome Information for Klebsiella variicola

Pathogen Detection Resources

There are 1694 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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