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ASM1810577v1

Organism name:
Citrus sinensis (sweet orange)
Isolate:
HZAU_DHSO_2021
BioSample:
SAMN16516428
BioProject:
PRJNA347609
Submitter:
Huazhong Agriculture University
Date:
2021/04/23
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_018105775.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAFBAU01
Assembly method:
Necat v. 1.0
Expected final version:
yes
Genome coverage:
103.0x
Sequencing technology:
Oxford Nanopore

IDs: 9928801 [UID] 26458438 [GenBank]

See Genome Information for Citrus sinensis

There are 16 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length334,322,655
Total ungapped length334,294,388
Gaps between scaffolds0
Number of scaffolds232
Scaffold N5032,314,164
Scaffold L505
Number of contigs267
Contig N5024,160,866
Contig L506
Total number of chromosomes and plasmids9
Number of component sequences (WGS or clone)232

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_018105785.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1CM030740.1n/an/a0
Chromosome 2CM030741.1n/an/a0
Chromosome 3CM030742.1n/an/a0
Chromosome 4CM030743.1n/an/a0
Chromosome 5CM030744.1n/an/a0
Chromosome 6CM030745.1n/an/a0
Chromosome 7CM030746.1n/an/a0
Chromosome 8CM030747.1n/an/a0
Chromosome 9CM030748.1n/an/a0
unplacedn/an/an/a223

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All334,322,655232334,294,38832,314,164350
Chromosome 130,615,164130,613,16430,615,16420
Chromosome 233,651,726133,650,72633,651,72610
Chromosome 337,424,164137,419,16437,424,16450
Chromosome 431,350,092131,350,09231,350,09200
Chromosome 550,232,142150,229,14250,232,14230
Chromosome 626,160,000126,159,00026,160,00010
Chromosome 729,698,530129,696,53029,698,53020
Chromosome 832,770,237132,763,47032,770,237110
Chromosome 932,314,164132,308,16432,314,16460
unplaced30,106,43622330,104,936500,00040