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ASM1805496v1

  • Anomalous assembly.
Organism name:
Lachnospiraceae bacterium (firmicutes)
Taxonomy check:
Inconclusive
Isolate:
Gw_UH_bin_256
BioSample:
SAMN18120857
BioProject:
PRJNA524094
Submitter:
Genomic and Applied Microbiology & Goettingen Genomics Laboratory
Date:
2021/04/17
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_018054965.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGPIL01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
19.7264590760456x
Sequencing technology:
Illumina HiSeq

IDs: 9881491 [UID] 26354038 [GenBank]

See Genome Information for Lachnospiraceae bacterium

There are 4765 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/10/2021 21:42:02
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,763
CDSs (total)::1,732
Genes (coding)::1,717
CDSs (with protein)::1,717
Genes (RNA)::31
rRNAs::1 (23S)
partial rRNAs::1 (23S)
tRNAs::28
ncRNAs::2
Pseudo Genes (total)::15
CDSs (without protein)::15
Pseudo Genes (ambiguous residues)::0 of 15
Pseudo Genes (frameshifted)::3 of 15
Pseudo Genes (incomplete)::10 of 15
Pseudo Genes (internal stop)::2 of 15
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,733,520
Total ungapped length1,732,320
Gaps between scaffolds0
Number of scaffolds263
Scaffold N507,204
Scaffold L5070
Number of contigs275
Contig N506,795
Contig L5073
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)263

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,733,5202631,732,3207,204120

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lachnospiraceae bacteriumLachnospiraceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_025567465.1Roseburia amylophilatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type99.2694.6357.16

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly