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ASM1800061v1

Organism name:
Paludibacteraceae bacterium (CFB group bacteria)
Taxonomy check:
Inconclusive
Isolate:
Go_SlPrim_bin_179
BioSample:
SAMN18119129
BioProject:
PRJNA524094
Submitter:
Genomic and Applied Microbiology & Goettingen Genomics Laboratory
Date:
2021/04/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
Excluded from RefSeq:
  • derived from metagenome
  • genus undefined
GenBank assembly accession:
GCA_018000615.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JAGNJO01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
228.385285327869x
Sequencing technology:
Illumina HiSeq

IDs: 9859241 [UID] 26294718 [GenBank]

See Genome Information for Paludibacteraceae bacterium

There are 615 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::04/09/2021 23:33:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::838
CDSs (total)::809
Genes (coding)::806
CDSs (with protein)::806
Genes (RNA)::29
tRNAs::28
ncRNAs::1
Pseudo Genes (total)::3
CDSs (without protein)::3
Pseudo Genes (ambiguous residues)::0 of 3
Pseudo Genes (frameshifted)::0 of 3
Pseudo Genes (incomplete)::3 of 3
Pseudo Genes (internal stop)::0 of 3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length927,255
Total ungapped length925,355
Gaps between scaffolds0
Number of scaffolds61
Scaffold N5022,137
Scaffold L5015
Number of contigs80
Contig N5019,188
Contig L5018
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)61

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced927,25561925,35522,137190

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Paludibacteraceae bacteriumPaludibacteraceae bacterium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_018064855.1Candidatus Physcocola equisuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type79.191.260.39

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena