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Source database (GenBank or RefSeq) File type

ASM1798609v1

Organism name:

Phocaeicola sp. (CFB group bacteria)

Taxonomy check:

Isolate:

Gw_UH_bin_133

BioSample:

SAMN18119488

BioProject:

PRJNA524094

Submitter:

Genomic and Applied Microbiology & Goettingen Genomics Laboratory

Date:

2021/04/15

Assembly type:

Assembly level:

Scaffold

Genome representation:

full

Excluded from RefSeq:

annotation fails MAG completeness check
derived from metagenome

GenBank assembly accession:

GCA_017986095.1 (latest)

RefSeq assembly accession:

n/a

RefSeq assembly and GenBank assembly identical:

n/a

WGS Project:

JAGNWF01

Assembly method:

SPAdes v. 3.13.0

Expected final version:

yes

Genome coverage:

188.187713229299x

Sequencing technology:

Illumina HiSeq

IDs: 9851781 [UID] 26280188 [GenBank]

See Genome Information for Phocaeicola sp.

Pathogen Detection Resources

There are 58 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017986095.1	n/a	n/a	ASM1798609v1	Scaffold	Latest GenBank

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI
Annotation Date::04/10/2021 04:52:18
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,733
CDSs (total)::1,687
Genes (coding)::1,661
CDSs (with protein)::1,661
Genes (RNA)::46
rRNAs::1 (5S)
complete rRNAs::1 (5S)
tRNAs::45
ncRNAs::0
Pseudo Genes (total)::26
CDSs (without protein)::26
Pseudo Genes (ambiguous residues)::0 of 26
Pseudo Genes (frameshifted)::12 of 26
Pseudo Genes (incomplete)::14 of 26
Pseudo Genes (internal stop)::9 of 26
Pseudo Genes (multiple problems)::9 of 26
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	1,991,925
Total ungapped length	1,990,725
Gaps between scaffolds	0
Number of scaffolds	157
Scaffold N50	18,263
Scaffold L50	37
Number of contigs	169
Contig N50	18,137
Contig L50	39
Total number of chromosomes and plasmids	0
Number of component sequences (WGS or clone)	157

	ANI	Query coverage	Subject coverage
Declared type	na	na	na
Best-match type	99.04	81.77	29.66

Assembly

Genome Assembly

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Download Assembly

ASM1798609v1

See Genome Information for Phocaeicola sp.

Pathogen Detection Resources

There are 58 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

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Assembly Information

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Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result