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ASM1786385v1

Organism name:
Klebsiella grimontii (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 2481359
BioSample:
SAMN17215155
BioProject:
PRJNA689715
Submitter:
University of Bern
Date:
2021/04/08
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_017863855.1 (latest)
RefSeq assembly accession:
GCF_017863855.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. 0.4.8
Expected final version:
yes
Genome coverage:
250.98x
Sequencing technology:
Illumina NovaSeq; Oxford Nanopore MinION

IDs: 9786041 [UID] 26137658 [GenBank] 26175948 [RefSeq]

See Genome Information for Klebsiella grimontii

There are 231 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/24/2024 14:28:44
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,991
CDSs (total)::5,875
Genes (coding)::5,788
CDSs (with protein)::5,788
Genes (RNA)::116
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::84
ncRNAs::7
Pseudo Genes (total)::87
CDSs (without protein)::87
Pseudo Genes (ambiguous residues)::0 of 87
Pseudo Genes (frameshifted)::36 of 87
Pseudo Genes (incomplete)::58 of 87
Pseudo Genes (internal stop)::15 of 87
Pseudo Genes (multiple problems)::20 of 87
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length6,316,653
Total ungapped length6,316,653
Total number of chromosomes and plasmids4

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017863865.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP067380.1=NZ_CP067380.1
Plasmid p2481359-1-VIM1-MCR9CP067381.1=NZ_CP067381.1
Plasmid p2481359-2CP067382.1=NZ_CP067382.1
Plasmid p2481359-3CP067383.1=NZ_CP067383.1

Assembly statistics

MoleculeTotal
Length
All6,316,653
Chromosome 5,925,906
Plasmid p2481359-1-VIM1-MCR9297,332
Plasmid p2481359-275,780
Plasmid p2481359-317,635

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella grimontiiKlebsiella grimontii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900200035.1Klebsiella grimontiitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900200035.1Klebsiella grimontiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.3885.6287.67
Best-match type99.3885.6287.67

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna