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ASM1774301v1

Organism name:
Xenorhabdus budapestensis (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: C-7-2
BioSample:
SAMN14595202
BioProject:
PRJNA625211
Submitter:
Chinese Academy of Agricultural Sciences
Date:
2021/04/04
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_017743015.1 (latest)
RefSeq assembly accession:
GCF_017743015.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0; SMRT Analysis v. 2.3
Expected final version:
yes
Genome coverage:
536.0x
Sequencing technology:
PacBio RSII

IDs: 9730981 [UID] 26005768 [GenBank] 26054928 [RefSeq]

See Genome Information for Xenorhabdus budapestensis

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from The State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, China
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline ... (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/  more

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/05/2021 18:18:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,896
CDSs (total)::3,792
Genes (coding)::3,596
CDSs (with protein)::3,596
Genes (RNA)::104
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::78
ncRNAs::4
Pseudo Genes (total)::196
CDSs (without protein)::196
Pseudo Genes (ambiguous residues)::0 of 196
Pseudo Genes (frameshifted)::100 of 196
Pseudo Genes (incomplete)::102 of 196
Pseudo Genes (internal stop)::58 of 196
Pseudo Genes (multiple problems)::57 of 196
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,366,413
Total ungapped length4,366,413
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017743025.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP072455.1=NZ_CP072455.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,366,413

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Xenorhabdus budapestensisXenorhabdus budapestensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_002632465.1Xenorhabdus budapestensistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002632465.1Xenorhabdus budapestensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1587.2388.34
Best-match type99.1587.2388.34

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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