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ASM1736024v1

Organism name:
Streptococcus thermophilus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 13498
BioSample:
SAMN15923541
BioProject:
PRJNA659704
Submitter:
University of Lausanne
Date:
2021/03/16
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_017360245.1 (latest)
RefSeq assembly accession:
GCF_017360245.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Flye v. 2.7.1-b1590
Expected final version:
yes
Genome coverage:
300x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore

IDs: 9527241 [UID] 25559448 [GenBank] 25580298 [RefSeq]

See Genome Information for Streptococcus thermophilus

There are 543 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/12/2023 03:13:00
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::1,960
CDSs (total)::1,872
Genes (coding)::1,674
CDSs (with protein)::1,674
Genes (RNA)::88
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::66
ncRNAs::4
Pseudo Genes (total)::198
CDSs (without protein)::198
Pseudo Genes (ambiguous residues)::0 of 198
Pseudo Genes (frameshifted)::129 of 198
Pseudo Genes (incomplete)::73 of 198
Pseudo Genes (internal stop)::97 of 198
Pseudo Genes (multiple problems)::84 of 198
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,865,049
Total ungapped length1,865,049
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017360255.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP061024.1=NZ_CP061024.1

Assembly statistics

MoleculeTotal
Length
Chromosome 1,865,049

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus thermophilusStreptococcus thermophilus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_010120595.1Streptococcus thermophilustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_010120595.1Streptococcus thermophilustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.6889.7379.61
Best-match type98.6889.7379.61

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna