Format

Send to:

Choose Destination

Download Assembly



ASM1730960v1

Organism name:
Serratia ureilytica (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: T6
BioSample:
SAMN18104335
BioProject:
PRJNA659846
Submitter:
Fujian Agriculture and Forestry University
Date:
2021/03/09
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_017309605.1 (latest)
RefSeq assembly accession:
GCF_017309605.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.5
Expected final version:
yes
Genome coverage:
393.4x
Sequencing technology:
Oxford Nanopore

IDs: 9503141 [UID] 25493498 [GenBank] 25539488 [RefSeq]

See Genome Information for Serratia ureilytica

There are 87 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/12/2021 16:17:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,824
CDSs (total)::4,702
Genes (coding)::4,674
CDSs (with protein)::4,674
Genes (RNA)::122
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::88
ncRNAs::12
Pseudo Genes (total)::28
CDSs (without protein)::28
Pseudo Genes (ambiguous residues)::0 of 28
Pseudo Genes (frameshifted)::11 of 28
Pseudo Genes (incomplete)::16 of 28
Pseudo Genes (internal stop)::4 of 28
Pseudo Genes (multiple problems)::3 of 28
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,102,941
Total ungapped length5,102,941
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_017309615.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP071320.1=NZ_CP071320.1

Assembly statistics

MoleculeTotal
Length
Chromosome 5,102,941

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Serratia ureilyticaSerratia ureilytica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013375155.1Serratia ureilyticatype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013375155.1Serratia ureilyticatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.1397.0793.10
Best-match type99.1397.0793.10

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
Support Center