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Source database (GenBank or RefSeq) File type

ASM1729891v1

Organism name:: Serratia marcescens subsp. marcescens ATCC 13880 (enterobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: ATCC 13880 substr. Sm_S50_jyu2015
BioSample:: SAMEA7301494
BioProject:: PRJEB40306
Submitter:: UNIVERSITY OF JYVASKYLA
Date:: 2021/03/08
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: not used as type
GenBank assembly accession:: GCA_017298915.1 (latest)
RefSeq assembly accession:: GCF_017298915.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: PacBio RS_HGAP_Assembly.3/Gap4 v. SMRTportal 2.3.0
Expected final version:: yes
Genome coverage:: 198x (for chromosome)x
Sequencing technology:: PacBio

IDs: 9494001 [UID] 25478258 [GenBank] 25492558 [RefSeq]

See Genome Information for Serratia marcescens

Pathogen Detection Resources

There are 2576 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_017298915.1	=	GCF_017298915.1	ASM1729891v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Name::GCF_017298915.1-RS_2024_04_04
Annotation Date::04/04/2024 05:34:27
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,933
CDSs (total)::4,802
Genes (coding)::4,774
CDSs (with protein)::4,774
Genes (RNA)::131
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::91
ncRNAs::18
Pseudo Genes (total)::30
CDSs (without protein)::28
Pseudo Genes (ambiguous residues)::0 of 30
Pseudo Genes (frameshifted)::14 of 30
Pseudo Genes (incomplete)::17 of 30
Pseudo Genes (internal stop)::6 of 30
Pseudo Genes (multiple problems)::9 of 30
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,160,448
Total ungapped length	5,160,448
Total number of chromosomes and plasmids	2

Molecule name	GenBank sequence		RefSeq sequence
Chromosome	CP071212.1	=	NZ_CP071212.1
Plasmid unnamed	CP071213.1	=	NZ_CP071213.1

Molecule	Total Length
All	5,160,448
Chromosome	5,117,259
Plasmid unnamed	43,189

	ANI	Query coverage	Subject coverage
Declared type	99.94	99.96	99.99
Best-match type	99.94	99.96	99.99

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ASM1729891v1

See Genome Information for Serratia marcescens

Pathogen Detection Resources

There are 2576 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

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