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ASM1690799v1

Organism name:
Clostridium sardiniense (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 2632
BioSample:
SAMN17619981
BioProject:
PRJNA695612
Submitter:
DOE Joint Genome Institute
Date:
2021/02/19
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016907995.1 (latest)
RefSeq assembly accession:
GCF_016907995.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAFBDA01
Assembly method:
SPAdes v. 3.14.1
Expected final version:
no
Genome coverage:
110.0x
Sequencing technology:
Illumina

IDs: 9299491 [UID] 25037248 [GenBank] 25059218 [RefSeq]

See Genome Information for Clostridium sardiniense

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,930,588
Total ungapped length3,930,588
Number of contigs54
Contig N50162,525
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)54

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,930,588543,930,588162,52500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Clostridium sardinienseClostridium sardiniense

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_019753795.1Clostridium sardiniensesyntype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019753795.1Clostridium sardiniensesyntype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5488.9088.63
Best-match type97.5488.9088.63

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna