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ASM1690333v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1295
BioSample:
SAMN16357437
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/02/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016903335.1 (latest)
RefSeq assembly accession:
GCF_016903335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 8.0.0, HGAP v. 4
Genome coverage:
881.44x
Sequencing technology:
Pacbio; Illumina

IDs: 9296921 [UID] 25030108 [GenBank] 25059798 [RefSeq]

See Genome Information for Escherichia coli

There are 265635 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/17/2023 05:08:46
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,012
CDSs (total)::4,895
Genes (coding)::4,706
CDSs (with protein)::4,706
Genes (RNA)::117
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::89
ncRNAs::6
Pseudo Genes (total)::189
CDSs (without protein)::189
Pseudo Genes (ambiguous residues)::0 of 189
Pseudo Genes (frameshifted)::77 of 189
Pseudo Genes (incomplete)::127 of 189
Pseudo Genes (internal stop)::38 of 189
Pseudo Genes (multiple problems)::47 of 189
Pseudo Genes (short protein)::4 of 189
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,142,344
Total ungapped length5,142,344
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016903345.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP069890.1=NZ_CP069890.1
Plasmid unnamedCP069891.1=NZ_CP069891.1

Assembly statistics

MoleculeTotal
Length
All5,142,344
Chromosome 5,028,114
Plasmid unnamed114,230

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000013265.1Escherichia coli UTI89claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000013265.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9898.9898.26
Best-match type99.9898.9898.26

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna