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ASM1690331v1

Organism name:
Escherichia coli (E. coli)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_1289
BioSample:
SAMN16357431
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/02/17
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016903315.1 (latest)
RefSeq assembly accession:
GCF_016903315.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 8.0.0, HGAP v. 4
Genome coverage:
1351.18x
Sequencing technology:
Pacbio; Illumina

IDs: 9296911 [UID] 25030088 [GenBank] 25059258 [RefSeq]

See Genome Information for Escherichia coli

Pathogen Detection Resources

There are 265896 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::06/17/2023 05:17:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,431
CDSs (total)::5,308
Genes (coding)::5,115
CDSs (with protein)::5,115
Genes (RNA)::123
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::92
ncRNAs::9
Pseudo Genes (total)::193
CDSs (without protein)::193
Pseudo Genes (ambiguous residues)::0 of 193
Pseudo Genes (frameshifted)::64 of 193
Pseudo Genes (incomplete)::139 of 193
Pseudo Genes (internal stop)::44 of 193
Pseudo Genes (multiple problems)::46 of 193
Pseudo Genes (short protein)::4 of 193
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,526,202
Total ungapped length5,526,202
Total number of chromosomes and plasmids8

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016903325.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP069882.1=NZ_CP069882.1
Plasmid unnamed1CP069883.1=NZ_CP069883.1
Plasmid unnamed2CP069884.1=NZ_CP069884.1
Plasmid unnamed3CP069885.1=NZ_CP069885.1
Plasmid unnamed4CP069886.1=NZ_CP069886.1
Plasmid unnamed5CP069887.1=NZ_CP069887.1
Plasmid unnamed6CP069888.1=NZ_CP069888.1
Plasmid unnamed7CP069889.1=NZ_CP069889.1

Assembly statistics

MoleculeTotal
Length
All5,526,202
Chromosome 5,176,465
Plasmid unnamed1131,034
Plasmid unnamed223,235
Plasmid unnamed395,822
Plasmid unnamed491,616
Plasmid unnamed52,257
Plasmid unnamed64,104
Plasmid unnamed71,669

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Escherichia coliEscherichia coli

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000350825.1Escherichia coli KTE26claderef

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000350825.1Escherichia colicladeref

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.7088.2192.54
Best-match type99.7088.2192.54

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna