U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Download Assembly



ASM1688976v1

Organism name:
Corynebacterium minutissimum (high G+C Gram-positive bacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: FDAARGOS_1196
BioSample:
SAMN16357338
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2021/02/15
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_016889765.1 (latest)
RefSeq assembly accession:
GCF_016889765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SMRT v. 8.0.0, HGAP v. 4
Genome coverage:
1635.47x
Sequencing technology:
Pacbio; Illumina

IDs: 9289221 [UID] 25006228 [GenBank] 25014408 [RefSeq]

See Genome Information for Corynebacterium minutissimum

There are 11 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::03/11/2023 05:40:32
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.4
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,577
CDSs (total)::2,511
Genes (coding)::2,486
CDSs (with protein)::2,486
Genes (RNA)::66
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::51
ncRNAs::3
Pseudo Genes (total)::25
CDSs (without protein)::25
Pseudo Genes (ambiguous residues)::0 of 25
Pseudo Genes (frameshifted)::6 of 25
Pseudo Genes (incomplete)::20 of 25
Pseudo Genes (internal stop)::5 of 25
Pseudo Genes (multiple problems)::5 of 25
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,725,312
Total ungapped length2,725,312
Total number of chromosomes and plasmids1

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...

Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016889775.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP069533.1=NZ_CP069533.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,725,312

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Corynebacterium minutissimumCorynebacterium minutissimum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900478045.1Corynebacterium minutissimumtype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900478045.1Corynebacterium minutissimumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type93.6188.5489.51
Best-match type93.6188.5489.51

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-matchna