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ASM1686542v1

Organism name:
Actinocatenispora thailandica (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: NBRC 105041
BioSample:
SAMD00219688
BioProject:
PRJDB9577
Submitter:
Biological Resource Center, National Institute of Technology and Evaluation (NBRC)
Date:
2021/01/12
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016865425.1 (latest)
RefSeq assembly accession:
GCF_016865425.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.4
Genome coverage:
253x
Sequencing technology:
SMRT cell 8 Pac V3

IDs: 9277191 [UID] 24971878 [GenBank] 25012508 [RefSeq]

See Genome Information for Actinocatenispora thailandica

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Annotated using prokka 1.11 from http://www.vicbioinformatics.com. Annotated at DFAST https://dfast.nig.ac.jp/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Name::GCF_016865425.1-RS_2024_03_28
Annotation Date::03/28/2024 06:39:35
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.7
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,790
CDSs (total)::6,711
Genes (coding)::6,509
CDSs (with protein)::6,509
Genes (RNA)::79
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::70
ncRNAs::3
Pseudo Genes (total)::202
CDSs (without protein)::202
Pseudo Genes (ambiguous residues)::0 of 202
Pseudo Genes (frameshifted)::89 of 202
Pseudo Genes (incomplete)::122 of 202
Pseudo Genes (internal stop)::2 of 202
Pseudo Genes (multiple problems)::11 of 202
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,426,695
Total ungapped length7,426,695
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_016865435.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome AP023355.1=NZ_AP023355.1

Assembly statistics

MoleculeTotal
Length
Chromosome 7,426,695

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Actinocatenispora thailandicaActinocatenispora thailandica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017312725.1Actinocatenispora comaritype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.2272.7967.90

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected