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ASM1674177v1

Organism name:
Streptomyces actinomycinicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: RCU-197
BioSample:
SAMN17267019
BioProject:
PRJNA690886
Submitter:
King Mongkut's Institute of Technology Ladkrabang
Date:
2021/01/21
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016741775.1 (latest)
RefSeq assembly accession:
GCF_016741775.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAERRK01
Assembly method:
SPAdes v. 3.1
Expected final version:
no
Genome coverage:
120x
Sequencing technology:
Illumina MiSeq

IDs: 9176091 [UID] 24696508 [GenBank] 24724268 [RefSeq]

See Genome Information for Streptomyces actinomycinicus

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::01/15/2021 21:40:24
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,742
CDSs (total)::7,660
Genes (coding)::7,416
CDSs (with protein)::7,416
Genes (RNA)::82
rRNAs::2, 1, 1 (5S, 16S, 23S)
complete rRNAs::2, 1 (5S, 16S)
partial rRNAs::1 (23S)
tRNAs::75
ncRNAs::3
Pseudo Genes (total)::244
CDSs (without protein)::244
Pseudo Genes (ambiguous residues)::0 of 244
Pseudo Genes (frameshifted)::99 of 244
Pseudo Genes (incomplete)::178 of 244
Pseudo Genes (internal stop)::14 of 244
Pseudo Genes (multiple problems)::43 of 244
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,790,999
Total ungapped length8,790,999
Number of contigs106
Contig N50270,358
Contig L509
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)106

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced8,790,9991068,790,999270,35800

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces actinomycinicusStreptomyces actinomycinicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002155905.1Streptomyces tricolorsuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.1057.2557.01

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected