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ASM1658362v1

Organism name:
Halorhodospira abdelmalekii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Culture-collection: DSM:2110
Infraspecific name:
Strain: DSM 2110
BioSample:
SAMN07535005
BioProject:
PRJNA387386
Submitter:
GEOMAR Helmholtz Centre for Ocean Research Kiel
Date:
2021/01/08
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_016583625.1 (latest)
RefSeq assembly accession:
GCF_016583625.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
NRRN01
Assembly method:
SPAdes v. 3.10.1
Expected final version:
yes
Genome coverage:
122x
Sequencing technology:
Illumina MiSeq

IDs: 9100701 [UID] 24497778 [GenBank] 24567838 [RefSeq]

See Genome Information for Halorhodospira abdelmalekii

History (Show revision history)

Comment

Annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (released 2013). Information about the Pipeline can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/24/2017 19:47:38
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline
Annotation Method::Best-placed reference protein set; GeneMarkS+
Annotation Software revision::4.2
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,798
CDS (total)::2,745
Genes (coding)::2,649
CDS (coding)::2,649
Genes (RNA)::53
rRNAs::2, 2, 1 (5S, 16S, 23S)
complete rRNAs::2, 1, 1 (5S, 16S, 23S)
partial rRNAs::1 (16S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::96
Pseudo Genes (ambiguous residues)::0 of 96
Pseudo Genes (frameshifted)::17 of 96
Pseudo Genes (incomplete)::80 of 96
Pseudo Genes (internal stop)::8 of 96
Pseudo Genes (multiple problems)::9 of 96
CRISPR Arrays::4
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,090,835
Total ungapped length3,090,835
Number of contigs158
Contig N5052,165
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)158

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,090,8351583,090,83552,16500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Halorhodospira abdelmalekiiHalorhodospira abdelmalekii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016583605.1Halorhodospira halochloristype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.803.193.53

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected