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ASM1599946v1

Organism name:
Lonsdalea populi (enterobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: N-5-1
BioSample:
SAMN16993121
BioProject:
PRJNA682499
Submitter:
BGI
Date:
2020/12/13
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_015999465.1 (latest)
RefSeq assembly accession:
GCF_015999465.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
ABySS v. 2.02
Expected final version:
yes
Genome coverage:
100.0x
Sequencing technology:
Illumina HiSeq

IDs: 8806491 [UID] 23838918 [GenBank] 23842758 [RefSeq]

See Genome Information for Lonsdalea populi

There are 27 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/08/2024 03:13:10
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::3,445
CDSs (total)::3,338
Genes (coding)::3,233
CDSs (with protein)::3,233
Genes (RNA)::107
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::75
ncRNAs::10
Pseudo Genes (total)::105
CDSs (without protein)::105
Pseudo Genes (ambiguous residues)::0 of 105
Pseudo Genes (frameshifted)::53 of 105
Pseudo Genes (incomplete)::70 of 105
Pseudo Genes (internal stop)::31 of 105
Pseudo Genes (multiple problems)::43 of 105
##Genome-Annotation-Data-END##

Global statistics

Total sequence length3,859,707
Total ungapped length3,859,707
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015999475.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP065534.1=NZ_CP065534.1

Assembly statistics

MoleculeTotal
Length
Chromosome 3,859,707

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Lonsdalea populiLonsdalea populi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002111595.1Lonsdalea britannicatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type90.1682.3681.89

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna