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ASM1576751v1

Organism name:
Pseudomonas fragi (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: A13BB
BioSample:
SAMN16870916
BioProject:
PRJNA610978
Submitter:
Robert Gordon University
Date:
2020/12/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_015767515.1 (latest)
RefSeq assembly accession:
GCF_015767515.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Unicycler v. Galaxy Version 0.4.8.0
Expected final version:
yes
Genome coverage:
260.0x
Sequencing technology:
Illumina MiSeq; Oxford Nanopore GridION

IDs: 8690131 [UID] 23578488 [GenBank] 23659818 [RefSeq]

See Genome Information for Pseudomonas fragi

There are 38 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from N626 SIWB Robert Gordon University University, Aberdeen. Scotland, UK
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::12/08/2020 10:14:26
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::5.0
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,515
CDSs (total)::4,413
Genes (coding)::4,372
CDSs (with protein)::4,372
Genes (RNA)::102
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::73
ncRNAs::4
Pseudo Genes (total)::41
CDSs (without protein)::41
Pseudo Genes (ambiguous residues)::0 of 41
Pseudo Genes (frameshifted)::15 of 41
Pseudo Genes (incomplete)::21 of 41
Pseudo Genes (internal stop)::11 of 41
Pseudo Genes (multiple problems)::5 of 41
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,940,458
Total ungapped length4,940,458
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_015767525.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP065202.1=NZ_CP065202.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,940,458

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pseudomonas fragiPseudomonas fragi

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900105835.1Pseudomonas fragitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900105835.1Pseudomonas fragitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9794.7192.25
Best-match type98.9794.7192.25

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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