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ASM1570378v1

Organism name:
Bifidobacterium dentium (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 848B
BioSample:
SAMN16287910
BioProject:
PRJNA666310
Submitter:
University of Parma
Date:
2020/11/30
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_015703785.1 (latest)
RefSeq assembly accession:
GCF_015703785.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACZDI01
Assembly method:
SPAdes v. 3.14.0
Expected final version:
yes
Genome coverage:
122x
Sequencing technology:
Illumina MiSeq

IDs: 8658111 [UID] 23476628 [GenBank] 23488748 [RefSeq]

See Genome Information for Bifidobacterium dentium

There are 75 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/01/2020 09:57:39
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,137
CDSs (total)::2,072
Genes (coding)::2,033
CDSs (with protein)::2,033
Genes (RNA)::65
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
tRNAs::55
ncRNAs::3
Pseudo Genes (total)::39
CDSs (without protein)::39
Pseudo Genes (ambiguous residues)::0 of 39
Pseudo Genes (frameshifted)::14 of 39
Pseudo Genes (incomplete)::16 of 39
Pseudo Genes (internal stop)::11 of 39
Pseudo Genes (multiple problems)::1 of 39
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,582,570
Total ungapped length2,582,570
Number of contigs21
Contig N50203,187
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)21

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,582,570212,582,570203,18700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bifidobacterium dentiumBifidobacterium dentium

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_001042595.1Bifidobacterium dentium JCM 1195 = DSM 20436type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_001042595.1Bifidobacterium dentiumtype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.8689.6687.85
Best-match type98.8689.6687.85

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna