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ASM1523557v1

Organism name:
Staphylococcus aureus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 4_5BalbC4O2_S4
BioSample:
SAMN16540178
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_015235575.1 (latest)
RefSeq assembly accession:
GCF_015235575.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGLS01
Assembly method:
SPAdes v. 3.1.6
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8421071 [UID] 22917408 [GenBank] 22930738 [RefSeq]

See Genome Information for Staphylococcus aureus

There are 90942 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 17:50:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,906
CDSs (total)::2,837
Genes (coding)::2,779
CDSs (with protein)::2,779
Genes (RNA)::69
rRNAs::4, 1, 2 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 1 (5S, 23S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::58
CDSs (without protein)::58
Pseudo Genes (ambiguous residues)::0 of 58
Pseudo Genes (frameshifted)::29 of 58
Pseudo Genes (incomplete)::27 of 58
Pseudo Genes (internal stop)::16 of 58
Pseudo Genes (multiple problems)::12 of 58
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,789,951
Total ungapped length2,789,951
Number of contigs228
Contig N50645,493
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)228

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,789,9512282,789,951645,49300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Staphylococcus aureusStaphylococcus aureus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_006364675.1Staphylococcus aureustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_006364675.1Staphylococcus aureustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.9493.7893.88
Best-match type98.9493.7893.88

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna