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ASM1523556v1

Organism name:
Streptococcus acidominimus (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 6_8CXCR23O2_S6
BioSample:
SAMN16540180
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_015235565.1 (latest)
RefSeq assembly accession:
GCF_015235565.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGLR01
Assembly method:
SPAdes v. 3.1.8
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8421061 [UID] 22917388 [GenBank] 22931518 [RefSeq]

See Genome Information for Streptococcus acidominimus

There are 7 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 18:33:14
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,387
CDSs (total)::2,331
Genes (coding)::2,269
CDSs (with protein)::2,269
Genes (RNA)::56
rRNAs::2, 1, 3 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 2 (5S, 23S)
tRNAs::46
ncRNAs::4
Pseudo Genes (total)::62
CDSs (without protein)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::26 of 62
Pseudo Genes (incomplete)::31 of 62
Pseudo Genes (internal stop)::8 of 62
Pseudo Genes (multiple problems)::3 of 62
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,471,173
Total ungapped length2,470,676
Gaps between scaffolds0
Number of scaffolds497
Scaffold N5031,105
Scaffold L5025
Number of contigs499
Contig N5031,105
Contig L5025
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)497

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,471,1734972,470,67631,10520

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus acidominimusStreptococcus acidominimus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900459045.1Streptococcus acidominimustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900459045.1Streptococcus acidominimustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.2581.8782.71
Best-match type98.2581.8782.71

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna