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ASM1523533v1

Organism name:
Neisseria sp. 19428wB4_WF04 (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 19428wB4_WF04
BioSample:
SAMN16540191
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_015235335.1 (latest)
RefSeq assembly accession:
GCF_015235335.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGLG01
Assembly method:
SPAdes v. 3.1.19
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8420941 [UID] 22917148 [GenBank] 22931698 [RefSeq]

See Genome Information for Neisseria sp. 19428wB4_WF04

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 18:53:36
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,647
CDSs (total)::2,592
Genes (coding)::2,426
CDSs (with protein)::2,426
Genes (RNA)::55
rRNAs::1, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
tRNAs::48
ncRNAs::4
Pseudo Genes (total)::166
CDSs (without protein)::166
Pseudo Genes (ambiguous residues)::0 of 166
Pseudo Genes (frameshifted)::95 of 166
Pseudo Genes (incomplete)::68 of 166
Pseudo Genes (internal stop)::47 of 166
Pseudo Genes (multiple problems)::40 of 166
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,606,596
Total ungapped length2,606,596
Number of contigs263
Contig N5038,646
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)263

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,606,5962632,606,59638,64600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Neisseria sp. 19428wB4_WF04Neisseria sp. 19428wB4_WF04

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_002108595.1Neisseria dentiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type88.1359.7356.44

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna