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ASM1523526v1

Organism name:
Streptococcus sp. 19428wC2_LYSM12 (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: 19428wC2_LYSM12
BioSample:
SAMN16540194
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_015235265.1 (latest)
RefSeq assembly accession:
GCF_015235265.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGLD01
Assembly method:
SPAdes v. 3.1.22
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8420901 [UID] 22917088 [GenBank] 22930978 [RefSeq]

See Genome Information for Streptococcus sp. 19428wC2_LYSM12

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 18:15:28
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,188
CDSs (total)::2,135
Genes (coding)::2,062
CDSs (with protein)::2,062
Genes (RNA)::53
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::73
CDSs (without protein)::73
Pseudo Genes (ambiguous residues)::0 of 73
Pseudo Genes (frameshifted)::25 of 73
Pseudo Genes (incomplete)::42 of 73
Pseudo Genes (internal stop)::26 of 73
Pseudo Genes (multiple problems)::17 of 73
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,425,255
Total ungapped length2,425,255
Number of contigs98
Contig N5076,915
Contig L5012
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)98

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,425,255982,425,25576,91500

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptococcus sp. 19428wC2_LYSM12Streptococcus sp. 19428wC2_LYSM12

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900459045.1Streptococcus acidominimustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.4537.7837.47

ANI result

Taxonomy check statusBest match statusComment
OKgenus-matchna