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ASM1523510v1

Organism name:
Jeotgalicoccus nanhaiensis (firmicutes)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 19428wE5_W307
BioSample:
SAMN16540205
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_015235105.1 (latest)
RefSeq assembly accession:
GCF_015235105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGLW01
Assembly method:
SPAdes v. 3.1.34
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8420821 [UID] 22916908 [GenBank] 22931498 [RefSeq]

See Genome Information for Jeotgalicoccus nanhaiensis

There are 6 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 18:44:03
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::2,311
CDSs (total)::2,245
Genes (coding)::2,226
CDSs (with protein)::2,226
Genes (RNA)::66
rRNAs::5, 1, 1 (5S, 16S, 23S)
complete rRNAs::5, 1, 1 (5S, 16S, 23S)
tRNAs::55
ncRNAs::4
Pseudo Genes (total)::19
CDSs (without protein)::19
Pseudo Genes (ambiguous residues)::0 of 19
Pseudo Genes (frameshifted)::9 of 19
Pseudo Genes (incomplete)::6 of 19
Pseudo Genes (internal stop)::5 of 19
Pseudo Genes (multiple problems)::1 of 19
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,247,970
Total ungapped length2,247,970
Number of contigs28
Contig N50456,920
Contig L503
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)28

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,247,970282,247,970456,92000

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Jeotgalicoccus nanhaiensisJeotgalicoccus nanhaiensis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003387165.1Jeotgalicoccus halotoleranstype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.3086.4387.02

ANI result

Taxonomy check statusBest match statusComment
Inconclusivemismatchdeclared species has no type-assembly