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ASM1523481v1

Organism name:
Bacteroides acidifaciens (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 19428wH3_P2318
BioSample:
SAMN16540215
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_015234815.1 (latest)
RefSeq assembly accession:
GCF_015234815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGKQ01
Assembly method:
SPAdes v. 3.1.44
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8420681 [UID] 22916628 [GenBank] 22932458 [RefSeq]

See Genome Information for Bacteroides acidifaciens

There are 490 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 19:31:16
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,416
CDSs (total)::4,334
Genes (coding)::4,123
CDSs (with protein)::4,123
Genes (RNA)::82
rRNAs::6, 1, 1 (5S, 16S, 23S)
complete rRNAs::6, 1, 1 (5S, 16S, 23S)
tRNAs::72
ncRNAs::2
Pseudo Genes (total)::211
CDSs (without protein)::211
Pseudo Genes (ambiguous residues)::0 of 211
Pseudo Genes (frameshifted)::70 of 211
Pseudo Genes (incomplete)::151 of 211
Pseudo Genes (internal stop)::37 of 211
Pseudo Genes (multiple problems)::41 of 211
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,137,552
Total ungapped length5,137,552
Number of contigs233
Contig N5075,103
Contig L5021
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)233

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced5,137,5522335,137,55275,10300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Bacteroides acidifaciensBacteroides acidifaciens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_024623065.1Bacteroides acidifacienssuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_024623065.1Bacteroides acidifacienssuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type98.7778.5483.20
Best-match type98.7778.5483.20

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna