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ASM1523476v1

Organism name:
Gemella palaticanis (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: CIP106318T.1
BioSample:
SAMN16540219
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_015234765.1 (latest)
RefSeq assembly accession:
GCF_015234765.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGKN01
Assembly method:
SPAdes v. 3.1.48
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8420661 [UID] 22916588 [GenBank] 22930818 [RefSeq]

See Genome Information for Gemelliphila palaticanis

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 16:55:43
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::1,884
CDSs (total)::1,828
Genes (coding)::1,799
CDSs (with protein)::1,799
Genes (RNA)::56
rRNAs::5, 3, 3 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 2, 2 (5S, 16S, 23S)
tRNAs::41
ncRNAs::4
Pseudo Genes (total)::29
CDSs (without protein)::29
Pseudo Genes (ambiguous residues)::0 of 29
Pseudo Genes (frameshifted)::13 of 29
Pseudo Genes (incomplete)::9 of 29
Pseudo Genes (internal stop)::11 of 29
Pseudo Genes (multiple problems)::4 of 29
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length1,802,210
Total ungapped length1,802,210
Number of contigs282
Contig N5092,346
Contig L506
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)282

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced1,802,2102821,802,21092,34600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Gemella palaticanisGemella palaticanis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013415235.1Gemella palaticanistype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013415235.1Gemella palaticanistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.0099.5899.58
Best-match type100.0099.5899.58

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna