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ASM1523474v1

Organism name:
Sanguibacter inulinus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM100099.1
BioSample:
SAMN16540220
BioProject:
PRJNA671681
Submitter:
King's College London
Date:
2020/11/04
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_015234745.1 (latest)
RefSeq assembly accession:
GCF_015234745.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JADGKM01
Assembly method:
SPAdes v. 3.1.49
Expected final version:
yes
Genome coverage:
30x
Sequencing technology:
Illumina HiSeq

IDs: 8420651 [UID] 22916568 [GenBank] 22932558 [RefSeq]

See Genome Information for Sanguibacter inulinus

There are 3 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::10/30/2020 20:04:17
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.13
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,818
CDSs (total)::3,755
Genes (coding)::3,683
CDSs (with protein)::3,683
Genes (RNA)::63
rRNAs::4, 4, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 3 (5S, 16S)
tRNAs::51
ncRNAs::3
Pseudo Genes (total)::72
CDSs (without protein)::72
Pseudo Genes (ambiguous residues)::0 of 72
Pseudo Genes (frameshifted)::3 of 72
Pseudo Genes (incomplete)::67 of 72
Pseudo Genes (internal stop)::3 of 72
Pseudo Genes (multiple problems)::1 of 72
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,259,108
Total ungapped length4,259,108
Number of contigs109
Contig N5067,491
Contig L5020
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)109

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,259,1081094,259,10867,49100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Sanguibacter inulinusSanguibacter inulinus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_013415325.1Sanguibacter inulinustype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_013415325.1Sanguibacter inulinustype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.0099.9999.99
Best-match type100.0099.9999.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna