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LSU_RangTar_1.0

Organism name:
Rangifer tarandus granti (reindeer)
Isolate:
KJH-003
Sex:
male
BioSample:
SAMN15639372
BioProject:
PRJNA648372
Submitter:
Louisiana State University
Date:
2020/10/21
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_014898785.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACGUM01
Assembly method:
supernova v. 2.1.1
Expected final version:
no
Genome coverage:
68.0x
Sequencing technology:
Illumina HiSeq

IDs: 8254921 [UID] 22543468 [GenBank]

See Genome Information for Rangifer tarandus

There are 9 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length2,537,222,158
Total ungapped length2,508,082,321
Gaps between scaffolds0
Number of scaffolds17,179
Scaffold N509,347,320
Scaffold L5079
Number of contigs38,593
Contig N50231,339
Contig L503,149
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)17,179

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,537,205,79617,1782,508,065,9599,347,32021,4140
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,362116,36216,36200