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ASM1469843v1

Organism name:
Scytonema hofmannii FACHB-248 (cyanobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: FACHB-248
BioSample:
SAMN13702671
BioProject:
PRJNA598298
Submitter:
South China Normal University
Date:
2020/09/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_014698435.1 (latest)
RefSeq assembly accession:
GCF_014698435.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACJTA01
Assembly method:
SPAdes v. 3.1
Expected final version:
yes
Genome coverage:
50x
Sequencing technology:
Illumina HiSeq

IDs: 8143441 [UID] 22255458 [GenBank] 22331278 [RefSeq]

See Genome Information for Scytonema hofmannii

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/08/2020 01:47:29
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::7,125
CDSs (total)::7,057
Genes (coding)::6,728
CDSs (with protein)::6,728
Genes (RNA)::68
rRNAs::4, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::3 (5S)
tRNAs::58
ncRNAs::4
Pseudo Genes (total)::329
CDSs (without protein)::329
Pseudo Genes (ambiguous residues)::0 of 329
Pseudo Genes (frameshifted)::85 of 329
Pseudo Genes (incomplete)::231 of 329
Pseudo Genes (internal stop)::48 of 329
Pseudo Genes (multiple problems)::33 of 329
CRISPR Arrays::12
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,929,393
Total ungapped length7,929,393
Number of contigs195
Contig N5063,491
Contig L5037
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)195

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,929,3931957,929,39363,49100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Scytonema hofmannii FACHB-248Scytonema hofmannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000346485.2Scytonema hofmannii PCC 7110type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020829645.1Nostoc mirabiletype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.082.311.49
Best-match type84.598.516.83

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena