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ASM1469712v1

  • Anomalous assembly.
Organism name:
Anabaena minutissima FACHB-250 (cyanobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: FACHB-250
BioSample:
SAMN13702717
BioProject:
PRJNA598298
Submitter:
South China Normal University
Date:
2020/09/22
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Assembly anomaly:
contaminated
Excluded from RefSeq:
  • contaminated
GenBank assembly accession:
GCA_014697125.1 (latest)
RefSeq assembly accession:
GCF_014697125.1 (suppressed)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACJRG01
Assembly method:
SPAdes v. 3.1
Expected final version:
yes
Genome coverage:
50x
Sequencing technology:
Illumina HiSeq

IDs: 8142821 [UID] 22254048 [GenBank] 22328638 [RefSeq]

See Genome Information for Anabaena minutissima

There are 2 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::08/07/2020 23:28:30
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,161
CDSs (total)::6,085
Genes (coding)::5,861
CDSs (with protein)::5,861
Genes (RNA)::76
rRNAs::5, 3, 2 (5S, 16S, 23S)
complete rRNAs::4, 1, 1 (5S, 16S, 23S)
partial rRNAs::1, 2, 1 (5S, 16S, 23S)
tRNAs::62
ncRNAs::4
Pseudo Genes (total)::224
CDSs (without protein)::224
Pseudo Genes (ambiguous residues)::0 of 224
Pseudo Genes (frameshifted)::59 of 224
Pseudo Genes (incomplete)::162 of 224
Pseudo Genes (internal stop)::34 of 224
Pseudo Genes (multiple problems)::28 of 224
CRISPR Arrays::12
##Genome-Annotation-Data-END##

Global statistics

Total sequence length7,065,205
Total ungapped length7,065,205
Number of contigs119
Contig N50161,999
Contig L5014
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)119

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,065,2051197,065,205161,99900

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Anabaena minutissima FACHB-250Anabaena minutissima

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_019359495.1Goleter apudmaresuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.846.947.30

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena