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ASM1464881v1

Organism name:
Streptomyces flaveolus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: JCM 4032
BioSample:
SAMD00245381
BioProject:
PRJDB10510
Submitter:
WFCC-MIRCEN World Data Centre for Microorganisms (WDCM)
Date:
2020/09/12
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_014648815.1 (latest)
RefSeq assembly accession:
GCF_014648815.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
BMRV01
Assembly method:
gcType assembly pipeline
Genome coverage:
64X
Sequencing technology:
Illumina HiSeq X Ten

IDs: 8119901 [UID] 22192018 [GenBank] 22210948 [RefSeq]

See Genome Information for Streptomyces flaveolus

Pathogen Detection Resources

There are 2 assemblies for this organism

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History (Show revision history)

Comment

Genome sequencing and analysis were conducted under the Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project (http://gctype.wdcm.org). The genomic data are also available at http://gctype.wdcm.org/sequencing/GCM10010216 

Annotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp)

Global statistics

Total sequence length7,870,528
Total ungapped length7,870,528
Number of contigs49
Contig N50396,731
Contig L507
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)49

Supplemental Content

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Assembly Information

Related Information

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length		Contig
Count		Ungapped
Length		Contig
N50		Spanned
Gaps		Unspanned
Gaps
unplaced7,870,528497,870,528396,73100

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces flaveolusStreptomyces flaveolus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_020312315.1Streptomyces solaniscabieitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type97.4087.7183.45

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected