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ASM1448961v1

Organism name:
Streptomyces genisteinicus (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: CRPJ-33
BioSample:
SAMN15929990
BioProject:
PRJNA659886
Submitter:
Hunan University of Science and Technology
Date:
2020/09/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_014489615.1 (latest)
RefSeq assembly accession:
GCF_014489615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 2.3
Expected final version:
no
Genome coverage:
100.0x
Sequencing technology:
Oxford Nanopore

IDs: 8042241 [UID] 22003238 [GenBank] 22004838 [RefSeq]

See Genome Information for Streptomyces genisteinicus

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/19/2022 20:31:34
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::6,831
CDSs (total)::6,736
Genes (coding)::6,600
CDSs (with protein)::6,600
Genes (RNA)::95
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::74
ncRNAs::3
Pseudo Genes (total)::142
CDSs (without protein)::136
Pseudo Genes (ambiguous residues)::0 of 142
Pseudo Genes (frameshifted)::39 of 142
Pseudo Genes (incomplete)::112 of 142
Pseudo Genes (internal stop)::7 of 142
Pseudo Genes (multiple problems)::21 of 142
CRISPR Arrays::3
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,188,347
Total ungapped length8,188,347
Total number of chromosomes and plasmids3

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_014489625.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP060825.1=NZ_CP060825.1
Plasmid unnamed2CP060826.1=NZ_CP060826.1
Plasmid unnamed3CP060827.1=NZ_CP060827.1

Assembly statistics

MoleculeTotal
Length
All8,188,347
Chromosome 7,631,890
Plasmid unnamed2476,916
Plasmid unnamed379,541

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces genisteinicusStreptomyces genisteinicus

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_016919245.1Streptomyces zhihengiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type91.0975.6463.63

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected
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