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ASM1446697v1

Organism name:
Leishmania chagasi (kinetoplastids)
Infraspecific name:
Strain: MCER/BR/1981/M6445/Salvaterra
Isolate:
M6445
BioSample:
SAMN10964360
BioProject:
PRJNA523126
Submitter:
Instituto evandro Chagas
Date:
2020/09/03
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_014466975.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
Assembly method:
SOAPdenovo v. 3
Expected final version:
no
Reference guided assembly:
JPCM5
Genome coverage:
150.0x
Sequencing technology:
Illumina MiSeq

IDs: 8028921 [UID] 21977308 [GenBank]

See Genome Information for Leishmania chagasi

There are 4 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length31,924,566
Total ungapped length31,901,907
Gaps between scaffolds0
Number of scaffolds36
Scaffold N501,043,794
Scaffold L5011
Number of contigs239
Contig N50302,081
Contig L5030
Total number of chromosomes and plasmids36
Number of component sequences (WGS or clone)36

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCA_014467005.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome 1CP048183.1n/an/a
Chromosome 2CP048194.1n/an/a
Chromosome 3CP048202.1n/an/a
Chromosome 4CP048203.1n/an/a
Chromosome 5CP048204.1n/an/a
Chromosome 6CP048172.1n/an/a
Chromosome 7CP048205.1n/an/a
Chromosome 8CP048206.1n/an/a
Chromosome 9CP048207.1n/an/a
Chromosome 10CP048173.1n/an/a
Chromosome 11CP048174.1n/an/a
Chromosome 12CP048175.1n/an/a
Chromosome 13CP048176.1n/an/a
Chromosome 14CP048177.1n/an/a
Chromosome 15CP048178.1n/an/a
Chromosome 16CP048179.1n/an/a
Chromosome 17CP048180.1n/an/a
Chromosome 18CP048181.1n/an/a
Chromosome 19CP048182.1n/an/a
Chromosome 20CP048184.1n/an/a
Chromosome 21CP048185.1n/an/a
Chromosome 22CP048186.1n/an/a
Chromosome 23CP048187.1n/an/a
Chromosome 24CP048188.1n/an/a
Chromosome 25CP048189.1n/an/a
Chromosome 26CP048190.1n/an/a
Chromosome 27CP048191.1n/an/a
Chromosome 28CP048192.1n/an/a
Chromosome 29CP048193.1n/an/a
Chromosome 30CP048195.1n/an/a
Chromosome 31CP048196.1n/an/a
Chromosome 32CP048197.1n/an/a
Chromosome 33CP048198.1n/an/a
Chromosome 34CP048199.1n/an/a
Chromosome 35CP048200.1n/an/a
Chromosome 36CP048201.1n/an/a

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All31,924,5663631,901,9071,043,7942030
Chromosome 1277,9321277,732277,93220
Chromosome 2334,0961334,096334,09600
Chromosome 3382,3531382,153382,35320
Chromosome 4475,3361474,634475,33670
Chromosome 5448,9961448,696448,99630
Chromosome 6523,3491520,639523,34920
Chromosome 7592,3811591,073592,381130
Chromosome 8495,4151495,415495,41500
Chromosome 9572,0881572,088572,08800
Chromosome 10547,2341546,726547,23450
Chromosome 11575,7981575,598575,79820
Chromosome 12568,4871566,985568,487150
Chromosome 13645,7731644,969645,77380
Chromosome 14639,2721638,569639,27270
Chromosome 15617,6321616,830617,63280
Chromosome 16698,8651697,960698,86590
Chromosome 17667,3551666,555667,35580
Chromosome 18720,1771719,774720,17740
Chromosome 19742,4981742,498742,49800
Chromosome 20732,5881732,088732,58850
Chromosome 21759,8921759,491759,89240
Chromosome 22659,4651658,810659,46570
Chromosome 23773,9811773,981773,98100
Chromosome 24867,0561867,033867,05620
Chromosome 25886,9011886,197886,90170
Chromosome 261,050,16811,049,0621,050,168110
Chromosome 271,043,79411,043,3871,043,79450
Chromosome 281,163,43611,163,4361,163,43600
Chromosome 291,221,93011,221,2251,221,93070
Chromosome 301,365,10111,364,9011,365,10120
Chromosome 311,468,86411,468,1571,468,86470
Chromosome 321,547,48711,547,4871,547,48700
Chromosome 331,448,12511,447,3071,448,12590
Chromosome 341,668,21211,666,5441,668,212150
Chromosome 352,068,49212,066,7762,068,492170
Chromosome 362,674,03712,673,0352,674,037100