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ASM1439616v1

Organism name:
Erysipelothrix inopinata (firmicutes)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 15511
BioSample:
SAMN15892348
BioProject:
PRJNA658868
Submitter:
Kyung Hee University
Date:
2020/09/02
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_014396165.1 (latest)
RefSeq assembly accession:
GCF_014396165.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3.0
Expected final version:
yes
Genome coverage:
360.0x
Sequencing technology:
PacBio RSII

IDs: 7990131 [UID] 21904168 [GenBank] 21984018 [RefSeq]

See Genome Information for Erysipelothrix inopinata

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from DSM 15511

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/06/2023 04:24:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::2,142
CDSs (total)::2,079
Genes (coding)::2,068
CDSs (with protein)::2,068
Genes (RNA)::63
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::47
ncRNAs::4
Pseudo Genes (total)::11
CDSs (without protein)::11
Pseudo Genes (ambiguous residues)::0 of 11
Pseudo Genes (frameshifted)::6 of 11
Pseudo Genes (incomplete)::3 of 11
Pseudo Genes (internal stop)::3 of 11
Pseudo Genes (multiple problems)::1 of 11
##Genome-Annotation-Data-END##

Global statistics

Total sequence length2,217,552
Total ungapped length2,217,552
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_014396175.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP060715.1=NZ_CP060715.1

Assembly statistics

MoleculeTotal
Length
Chromosome 2,217,552

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Erysipelothrix inopinataErysipelothrix inopinata

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900637845.1Erysipelothrix rhusiopathiaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type83.804.675.84

ANI result

Taxonomy check statusBest match statusComment
OKlow-coverageAssembly is the type-strain, no match is expected