Full Report

Send to:

Choose Destination

File
Clipboard
Collections

Download Assembly

Source database (GenBank or RefSeq) File type

ASM1435301v1

Organism name:: Chitinimonas koreensis (b-proteobacteria)
Taxonomy check:: OK
Infraspecific name:: Strain: R2A43-10
BioSample:: SAMN15893681
BioProject:: PRJNA658969
Submitter:: Shandong University
Date:: 2020/09/01
Assembly type:: na
Assembly level:: Complete Genome
Genome representation:: full
Relation to type material:: assembly from type material
GenBank assembly accession:: GCA_014353015.1 (latest)
RefSeq assembly accession:: GCF_014353015.1 (latest)
RefSeq assembly and GenBank assembly identical:: yes
Assembly method:: GS De Novo Assembler v. May-2019
Expected final version:: yes
Genome coverage:: 200.0x
Sequencing technology:: PacBio Sequel

IDs: 7972261 [UID] 21859898 [GenBank] 21975828 [RefSeq]

See Genome Information for Chitinimonas koreensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_014353015.1	=	GCF_014353015.1	ASM1435301v1	Complete Genome	Latest GenBank, Latest RefSeq

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/
Bacteria and source DNA available from Shandong University-Helmholtz Institute of Biotechnology

Genome-Annotation-Data

##Genome-Annotation-Data-START##Annotation Provider::NCBI RefSeq
Annotation Date::09/03/2023 17:02:31
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,968
CDSs (total)::4,898
Genes (coding)::4,740
CDSs (with protein)::4,740
Genes (RNA)::70
rRNAs::4, 4, 4 (5S, 16S, 23S)
complete rRNAs::4, 4, 4 (5S, 16S, 23S)
tRNAs::54
ncRNAs::4
Pseudo Genes (total)::158
CDSs (without protein)::158
Pseudo Genes (ambiguous residues)::0 of 158
Pseudo Genes (frameshifted)::102 of 158
Pseudo Genes (incomplete)::66 of 158
Pseudo Genes (internal stop)::2 of 158
Pseudo Genes (multiple problems)::12 of 158
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length	5,648,696
Total ungapped length	5,648,696
Total number of chromosomes and plasmids	1

	ANI	Query coverage	Subject coverage
Declared type	99.95	98.54	99.86
Best-match type	99.95	98.54	99.86

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Download Assembly

ASM1435301v1

See Genome Information for Chitinimonas koreensis

Pathogen Detection Resources

There are 2 assemblies for this organism

History (Show revision history)

Comment

Genome-Annotation-Data

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly QA

Taxonomy Check Data

Declared organism

Best-matching type-strain assembly for declared species

Best-matching type-strain assembly

Average Nucleotide Identity (ANI) data

ANI result