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ASM1429503v1

Organism name:
Streptomyces buecherae (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: AC541
BioSample:
SAMN15800794
BioProject:
PRJNA656727
Submitter:
NCAUR-ARS-USDA
Date:
2020/08/25
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_014295035.1 (latest)
RefSeq assembly accession:
GCF_014295035.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CLC Genomics workbench v. 20.0.4
Expected final version:
no
Genome coverage:
200.0x
Sequencing technology:
PacBio; miseq

IDs: 7942271 [UID] 21773898 [GenBank] 21817998 [RefSeq]

See Genome Information for Streptomyces buecherae

There are 8 assemblies for this organism

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History (Show revision history)

Comment

Bacteria and source DNA available from ATCC and JCM
The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::02/14/2024 03:04:11
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::6,697
CDSs (total)::6,607
Genes (coding)::6,444
CDSs (with protein)::6,444
Genes (RNA)::90
rRNAs::6, 6, 6 (5S, 16S, 23S)
complete rRNAs::6, 6, 6 (5S, 16S, 23S)
tRNAs::69
ncRNAs::3
Pseudo Genes (total)::164
CDSs (without protein)::163
Pseudo Genes (ambiguous residues)::0 of 164
Pseudo Genes (frameshifted)::41 of 164
Pseudo Genes (incomplete)::147 of 164
Pseudo Genes (internal stop)::11 of 164
Pseudo Genes (multiple problems)::30 of 164
CRISPR Arrays::2
##Genome-Annotation-Data-END##

Global statistics

Total sequence length8,416,829
Total ungapped length8,416,829
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_014295045.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP060404.1=NZ_CP060404.1

Assembly statistics

MoleculeTotal
Length
Chromosome 8,416,829

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptomyces buecheraeStreptomyces buecherae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014203645.1Streptomyces zagrosensistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type86.5944.3942.71

ANI result

Taxonomy check statusBest match statusComment
OKbelow-threshold-mismatchAssembly is the type-strain, mismatch is within genus and expected