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mRhiFer1.p

Organism name:
Rhinolophus ferrumequinum (greater horseshoe bat)
Isolate:
mRhiFer1
Sex:
female
BioSample:
SAMN14734547
BioProject:
PRJNA628581
Submitter:
Bat1K
Date:
2020/08/13
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_014108255.1 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
JACAGC01
Assembly method:
DAmar v. APRIL-2019; Bionano Solve BSPQI + BSSSI v. 3.3; Salsa2 HiC v. git commit: e3ae7d8; GenomicConsensus v. git commit: 038de5c; longranger align v. 2.2.0; Freebayes v. 1.2.0; HiGlass manual curation v. 1.5
Expected final version:
no
Genome coverage:
73.3x
Sequencing technology:
PacBio Sequel CLR; 10X Genomics chromium linked reads; Bionano Genomics; Phase Genomics HiC; PacBio Sequel IsoSeq

IDs: 7872041 [UID] 21573788 [GenBank]

See Genome Information for Rhinolophus ferrumequinum

There are 5 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,072,561,339
Total ungapped length2,055,682,508
Gaps between scaffolds0
Number of scaffolds50
Scaffold N5091,996,154
Scaffold L5010
Number of contigs342
Contig N5021,749,602
Contig L5028
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)50

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
unplaced2,072,544,453492,055,665,62291,996,1542920
MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
Mitochondrion MT16,886116,88616,88600
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