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115A1

Organism name:
Stutzerimonas azotifigens (g-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: 115A1
BioSample:
SAMN14085464
BioProject:
PRJNA606080
Submitter:
Northwestern University
Date:
2020/07/23
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_013522725.1 (latest)
RefSeq assembly accession:
GCF_013522725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAAMRF01
Assembly method:
SPAdes v. 3.13.0
Expected final version:
yes
Genome coverage:
124.0197x
Sequencing technology:
Illumina HiSeq

IDs: 7414891 [UID] 20543268 [GenBank] 20943238 [RefSeq]

See Genome Information for Stutzerimonas azotifigens

There are 2 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::03/02/2020 20:10:42
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.11
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,517
CDSs (total)::4,457
Genes (coding)::4,401
CDSs (with protein)::4,401
Genes (RNA)::60
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::1, 1, 1 (5S, 16S, 23S)
partial rRNAs::2 (5S)
tRNAs::51
ncRNAs::4
Pseudo Genes (total)::56
CDSs (without protein)::56
Pseudo Genes (ambiguous residues)::0 of 56
Pseudo Genes (frameshifted)::20 of 56
Pseudo Genes (incomplete)::42 of 56
Pseudo Genes (internal stop)::4 of 56
Pseudo Genes (multiple problems)::9 of 56
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,826,474
Total ungapped length4,826,474
Number of contigs34
Contig N50381,757
Contig L505
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)34

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,826,474344,826,474381,75700

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Stutzerimonas azotifigensStutzerimonas azotifigens

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000425625.1Stutzerimonas azotifigens DSM 17556type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_005876855.1Stutzerimonas nosocomialistype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type84.3640.1738.79
Best-match type91.2183.9585.20

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna