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ASM1341629v1

Organism name:
Pusillimonas noertemannii (b-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 10065
BioSample:
SAMN15438383
BioProject:
PRJNA626537
Submitter:
ELTE Eotvos Lorand University
Date:
2020/07/15
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_013416295.1 (latest)
RefSeq assembly accession:
GCF_013416295.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACCEX01
Assembly method:
A5-miseq v. Aug 2016
Expected final version:
yes
Genome coverage:
181.8x
Sequencing technology:
Illumina MiSeq

IDs: 7359341 [UID] 20373378 [GenBank] 20383378 [RefSeq]

See Genome Information for Pusillimonas noertemannii

There are 4 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI
Annotation Date::07/10/2020 13:38:04
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::4.12
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::3,942
CDSs (total)::3,889
Genes (coding)::3,867
CDSs (with protein)::3,867
Genes (RNA)::53
rRNAs::3, 1, 1 (5S, 16S, 23S)
complete rRNAs::3, 1, 1 (5S, 16S, 23S)
tRNAs::44
ncRNAs::4
Pseudo Genes (total)::22
CDSs (without protein)::22
Pseudo Genes (ambiguous residues)::0 of 22
Pseudo Genes (frameshifted)::5 of 22
Pseudo Genes (incomplete)::16 of 22
Pseudo Genes (internal stop)::3 of 22
Pseudo Genes (multiple problems)::2 of 22
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,213,299
Total ungapped length4,213,299
Number of contigs22
Contig N50881,362
Contig L502
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)22

Supplemental Content

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced4,213,299224,213,299881,36200

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Pusillimonas noertemanniiPusillimonas noertemannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_003545825.1Pusillimonas noertemanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_003545825.1Pusillimonas noertemanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9999.8499.98
Best-match type99.9999.8499.98

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna