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ASM1340993v1

Organism name:
Streptosporangium sandarakinum (high G+C Gram-positive bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: DSM 45763
BioSample:
SAMN14502533
BioProject:
PRJNA616591
Submitter:
DOE Joint Genome Institute
Date:
2020/07/13
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_013409935.1 (latest)
RefSeq assembly accession:
GCF_013409935.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JACCCO01
Assembly method:
HGAP v. smrtlink/7.0.1.66768, HGAP 4 (0.2.1)
Expected final version:
no
Genome coverage:
125.0x
Sequencing technology:
PacBio

IDs: 7343741 [UID] 20326668 [GenBank] 20370568 [RefSeq]

See Genome Information for Streptosporangium sandarakinum

History (Show revision history)

Comment

Global statistics

Total sequence length7,647,619
Total ungapped length7,647,619
Number of contigs4
Contig N504,102,733
Contig L501
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)4

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced7,647,61947,647,6194,102,73300

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Streptosporangium sandarakinumStreptosporangium sandarakinum

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
samena

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_014648055.1Streptosporangium pseudovulgaretype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type96.4187.9978.38

ANI result

Taxonomy check statusBest match statusComment
OKmismatchAssembly is the type-strain, mismatch is within genus and expected