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Source database (GenBank or RefSeq) File type

fAngAng1.pri

Organism name:

Anguilla anguilla (European eel)

Isolate:

fAngAng1

BioSample:

SAMN12623627

BioProject:

PRJNA561979

Submitter:

Vertebrate Genomes Project

Date:

2020/06/18

Assembly type:

haploid (principal pseudohaplotype of diploid)

Assembly level:

Chromosome

Genome representation:

full

RefSeq category:

representative genome

GenBank assembly accession:

GCA_013347855.1 (latest)

RefSeq assembly accession:

GCF_013347855.1 (latest)

RefSeq assembly and GenBank assembly identical:

no (hide details)

Only in RefSeq: chromosome MT

Data displayed for RefSeq version

WGS Project:

JABVMG01

Assembly method:

FALCON v. 1.3.0; FALCON-Unzip v. 1.2.0; purge_dups v. github ca23030ccf4254dfd2d3a5ea90d0eed41c24f88b; bionano Solve v. 3.4_06042019a; Salsa2 HiC v. 2.2; Arrow polishing and gap filling v. SMRTLink7.0.1; Longranger Align v. 2.2.2; freebayes v. 1.3.1; gEVAL manual curation v. 2020-02-04; VGP assembly pipeline v. 1.6

Expected final version:

Genome coverage:

51.23x

Sequencing technology:

PacBio Sequel I CLR; Illumina NovaSeq; Arima Genomics Hi-C; Bionano Genomics DLS

Linked assembly:

GCA_013347865.1 (alternate pseudohaplotype of diploid)

IDs: 7287991 [UID] 20100408 [GenBank] 20177198 [RefSeq]

See Genome Information for Anguilla anguilla

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_013347855.1	≠	GCF_013347855.1	fAngAng1.pri	Chromosome	Latest GenBank, Latest RefSeq

Comment

This assembly represents the principal haplotype of the diploid genome Anguilla anguilla and includes the chromosomes. The alternate haplotype sequences are in WGS project JABVMH000000000

Global statistics

Total sequence length	979,045,926
Total ungapped length	975,177,436
Gaps between scaffolds	0
Number of scaffolds	54
Scaffold N50	57,205,429
Scaffold L50	7
Number of contigs	693
Contig N50	5,114,673
Contig L50	54
Total number of chromosomes and plasmids	20
Number of component sequences (WGS or clone)	54

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	CM023565.1	=	NC_049201.1	0
Chromosome 2	CM023566.1	=	NC_049202.1	0
Chromosome 3	CM023567.1	=	NC_049203.1	0
Chromosome 4	CM023568.1	=	NC_049204.1	0
Chromosome 5	CM023569.1	=	NC_049205.1	0
Chromosome 6	CM023570.1	=	NC_049206.1	0
Chromosome 7	CM023571.1	=	NC_049207.1	0
Chromosome 8	CM023572.1	=	NC_049208.1	0
Chromosome 9	CM023573.1	=	NC_049209.1	0
Chromosome 10	CM023574.1	=	NC_049210.1	0
Chromosome 11	CM023575.1	=	NC_049211.1	0
Chromosome 12	CM023576.1	=	NC_049212.1	0
Chromosome 13	CM023577.1	=	NC_049213.1	0
Chromosome 14	CM023578.1	=	NC_049214.1	0
Chromosome 15	CM023579.1	=	NC_049215.1	0
Chromosome 16	CM023580.1	=	NC_049216.1	0
Chromosome 17	CM023581.1	=	NC_049217.1	0
Chromosome 18	CM023582.1	=	NC_049218.1	0
Chromosome 19	CM023583.1	=	NC_049219.1	0
unplaced	n/a	n/a	n/a	34

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	979,029,243	53	975,160,753	57,205,429	639
Chromosome 1	88,055,840	1	87,600,200	88,055,840	63
Chromosome 2	76,644,419	1	76,625,965	76,644,419	39
Chromosome 3	71,675,879	1	70,959,283	71,675,879	41
Chromosome 4	68,139,601	1	67,895,005	68,139,601	55
Chromosome 5	66,103,252	1	65,872,374	66,103,252	47
Chromosome 6	62,028,450	1	61,957,278	62,028,450	56
Chromosome 7	57,205,429	1	57,032,964	57,205,429	18
Chromosome 8	56,164,770	1	55,875,125	56,164,770	28
Chromosome 9	55,293,050	1	55,005,542	55,293,050	27
Chromosome 10	48,287,230	1	47,844,443	48,287,230	36
Chromosome 11	44,521,221	1	44,170,908	44,521,221	34
Chromosome 12	43,524,562	1	43,518,335	43,524,562	36
Chromosome 13	41,729,550	1	41,638,685	41,729,550	22
Chromosome 14	41,497,830	1	41,385,747	41,497,830	23
Chromosome 15	37,217,334	1	37,111,496	37,217,334	19
Chromosome 16	37,151,760	1	37,146,560	37,151,760	31
Chromosome 17	32,347,174	1	32,183,874	32,347,174	27
Chromosome 18	31,569,403	1	31,566,203	31,569,403	17
Chromosome 19	18,431,713	1	18,329,990	18,431,713	20
unplaced	1,440,776	34	1,440,776	49,466	0

Assembly

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fAngAng1.pri

See Genome Information for Anguilla anguilla

Pathogen Detection Resources

There are 4 assemblies for this organism

History (Show revision history)

Comment

Global statistics

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Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear