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ASM1328272v1

Organism name:
Yersinia mollaretii ATCC 43969 (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: ATCC 43969
BioSample:
SAMN15015919
BioProject:
PRJNA635101
Submitter:
PulseNet Next Generation Subtyping Methods Unit
Date:
2020/06/06
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
Relation to type material:
assembly from type material
GenBank assembly accession:
GCA_013282725.1 (latest)
RefSeq assembly accession:
GCF_013282725.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
HGAP v. 3
Expected final version:
yes
Genome coverage:
219.4x
Sequencing technology:
PacBio RSII

IDs: 7240441 [UID] 19950028 [GenBank] 19951188 [RefSeq]

See Genome Information for Yersinia mollaretii

There are 26 assemblies for this organism

See more

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::04/14/2022 17:01:15
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.1
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA; repeat_region
Genes (total)::4,112
CDSs (total)::3,999
Genes (coding)::3,937
CDSs (with protein)::3,937
Genes (RNA)::113
rRNAs::8, 7, 7 (5S, 16S, 23S)
complete rRNAs::8, 7, 7 (5S, 16S, 23S)
tRNAs::80
ncRNAs::11
Pseudo Genes (total)::62
CDSs (without protein)::62
Pseudo Genes (ambiguous residues)::0 of 62
Pseudo Genes (frameshifted)::26 of 62
Pseudo Genes (incomplete)::47 of 62
Pseudo Genes (internal stop)::8 of 62
Pseudo Genes (multiple problems)::18 of 62
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,603,534
Total ungapped length4,603,534
Total number of chromosomes and plasmids1

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_013282735.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP054043.1=NZ_CP054043.1

Assembly statistics

MoleculeTotal
Length
Chromosome 4,603,534

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Yersinia mollaretii ATCC 43969Yersinia mollaretii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000167995.1Yersinia mollaretii ATCC 43969type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000167995.1Yersinia mollaretiitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type100.0098.7999.96
Best-match type100.0098.7999.96

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna
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