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ASM1303505v1

Organism name:
Ruegeria arenilitoris (a-proteobacteria)
Taxonomy check:
Inconclusive
Infraspecific name:
Strain: HKCCA5932
BioSample:
SAMN13488725
BioProject:
PRJNA593724
Submitter:
The Chinese University of Hong Kong
Date:
2020/05/11
Assembly type:
na
Assembly level:
Contig
Genome representation:
full
GenBank assembly accession:
GCA_013035055.1 (latest)
RefSeq assembly accession:
GCF_013035055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
WQHF01
Assembly method:
SPAdes v. 3.9
Expected final version:
yes
Genome coverage:
200x
Sequencing technology:
BGISEQ-500

IDs: 7094361 [UID] 19505528 [GenBank] 19548258 [RefSeq]

See Genome Information for Ruegeria arenilitoris

There are 50 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,733,209
Total ungapped length3,733,209
Number of contigs18
Contig N50374,444
Contig L504
Total number of chromosomes and plasmids0
Number of component sequences (WGS or clone)18

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
The primary assembly unit does not have any assembled chromosomes or linkage groups.
Please download the full sequence report for information on the scaffolds.

Assembly statistics

MoleculeTotal
Length
Contig
Count
Ungapped
Length
Contig
N50
Spanned
Gaps
Unspanned
Gaps
unplaced3,733,209183,733,209374,44400

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Ruegeria arenilitorisRuegeria arenilitoris

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900129345.1Ruegeria intermediatype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type89.0072.9170.55

ANI result

Taxonomy check statusBest match statusComment
Inconclusivebelow-threshold-mismatchna