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ASM1293510v1

Organism name:
Acinetobacter baumannii (g-proteobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: PM194188
BioSample:
SAMN14420255
BioProject:
PRJNA613825
Submitter:
Christian Medical College
Date:
2020/04/30
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_012935105.1 (latest)
RefSeq assembly accession:
GCF_012935105.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
Canu v. 1.7; Unicycler v. 0.4.6
Expected final version:
yes
Genome coverage:
157.1399209x
Sequencing technology:
Illumina HiSeq; Oxford Nanopore GridION

IDs: 7051481 [UID] 19361528 [GenBank] 19380968 [RefSeq]

See Genome Information for Acinetobacter baumannii

Pathogen Detection Resources

There are 26623 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::01/09/2024 04:12:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,121
CDSs (total)::4,025
Genes (coding)::3,881
CDSs (with protein)::3,881
Genes (RNA)::96
rRNAs::6, 6, 7 (5S, 16S, 23S)
complete rRNAs::6, 6, 7 (5S, 16S, 23S)
tRNAs::73
ncRNAs::4
Pseudo Genes (total)::144
CDSs (without protein)::144
Pseudo Genes (ambiguous residues)::0 of 144
Pseudo Genes (frameshifted)::38 of 144
Pseudo Genes (incomplete)::102 of 144
Pseudo Genes (internal stop)::17 of 144
Pseudo Genes (multiple problems)::10 of 144
##Genome-Annotation-Data-END##

Global statistics

Total sequence length4,192,382
Total ungapped length4,192,382
Total number of chromosomes and plasmids7

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_012935115.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP050425.1=NZ_CP050425.1
Plasmid pPM194122_1CP050426.1=NZ_CP050426.1
Plasmid pPM194122_2CP050427.1=NZ_CP050427.1
Plasmid pPM194122_3CP050428.1=NZ_CP050428.1
Plasmid pPM194122_4CP050429.1=NZ_CP050429.1
Plasmid pPM194122_5CP050430.1=NZ_CP050430.1
Plasmid pPM194122_6CP050431.1=NZ_CP050431.1

Assembly statistics

MoleculeTotal
Length
All4,192,382
Chromosome 4,002,798
Plasmid pPM194122_1150,385
Plasmid pPM194122_218,783
Plasmid pPM194122_37,695
Plasmid pPM194122_47,540
Plasmid pPM194122_52,762
Plasmid pPM194122_62,419

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Acinetobacter baumanniiAcinetobacter baumannii

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_009759685.1Acinetobacter baumanniitype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_009759685.1Acinetobacter baumanniitype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.7582.1586.31
Best-match type97.7582.1586.31

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna