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ASM1257134v1

Organism name:
Enterobacteriaceae endosymbiont of Macroplea mutica (enterobacteria)
Taxonomy check:
Inconclusive
Isolate:
MmutSym
BioSample:
SAMN13256172
BioProject:
PRJNA587602
Submitter:
Johannes Gutenberg University Mainz
Date:
2020/04/20
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_012571345.1 (latest)
RefSeq assembly accession:
GCF_012571345.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
SPAdes v. v3.13.0
Expected final version:
yes
Genome coverage:
300x
Sequencing technology:
Illumina HiSeq

IDs: 6860711 [UID] 18974328 [GenBank] 19264248 [RefSeq]

See Genome Information for Enterobacteriaceae endosymbiont of Macroplea mutica

History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::05/06/2023 01:30:09
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.5
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::454
CDSs (total)::414
Genes (coding)::409
CDSs (with protein)::409
Genes (RNA)::40
rRNAs::2, 2, 2 (5S, 16S, 23S)
complete rRNAs::2, 2, 2 (5S, 16S, 23S)
tRNAs::31
ncRNAs::3
Pseudo Genes (total)::5
CDSs (without protein)::5
Pseudo Genes (ambiguous residues)::0 of 5
Pseudo Genes (frameshifted)::0 of 5
Pseudo Genes (incomplete)::4 of 5
Pseudo Genes (internal stop)::1 of 5
##Genome-Annotation-Data-END##

Global statistics

Total sequence length474,063
Total ungapped length474,063
Total number of chromosomes and plasmids2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_012571375.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP046218.1=NZ_CP046218.1
Plasmid unnamedCP046219.1=NZ_CP046219.1

Assembly statistics

MoleculeTotal
Length
All474,063
Chromosome 467,736
Plasmid unnamed6,327

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Enterobacteriaceae endosymbiont of Macroplea muticaEnterobacteriaceae endosymbiont of Macroplea mutica

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
no-typeno-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000007365.1Buchnera aphidicolasuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared typenanana
Best-match type82.801.771.31

ANI result

Taxonomy check statusBest match statusComment
Inconclusivelow-coveragena