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ASM1236779v1

Organism name:
Erwinia amylovora (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: 241/07
BioSample:
SAMN13919322
BioProject:
PRJNA603094
Submitter:
Agriculture and Agri-Food Canada
Date:
2020/04/15
Assembly type:
na
Assembly level:
Scaffold
Genome representation:
full
GenBank assembly accession:
GCA_012367795.1 (latest)
RefSeq assembly accession:
GCF_012367795.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
WGS Project:
JAAEWW01
Assembly method:
CLC NGS Cell v. Jan-2018
Expected final version:
yes
Genome coverage:
270x
Sequencing technology:
Illumina NextSeq

IDs: 6765711 [UID] 18758288 [GenBank] 18902988 [RefSeq]

See Genome Information for Erwinia amylovora

There are 248 assemblies for this organism

See more

History (Show revision history)

Comment

Global statistics

Total sequence length3,819,515
Total ungapped length3,819,464
Gaps between scaffolds0
Number of scaffolds83
Scaffold N50147,878
Scaffold L509
Number of contigs85
Contig N50145,126
Contig L509
Total number of chromosomes and plasmids1
Number of component sequences (WGS or clone)83

Supplemental Content

PubMed articles for this assembly

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_012367825.1)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Plasmid pEA29JAAEWW010000032.1=NZ_JAAEWW010000032.10
unplacedn/an/an/a82

Assembly statistics

MoleculeTotal
Length
Scaffold
Count
Ungapped
Length
Scaffold
N50
Spanned
Gaps
Unspanned
Gaps
All3,819,515833,819,464147,87820
Plasmid pEA2928,257128,25728,25700
unplaced3,791,258823,791,207148,28020

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Erwinia amylovoraErwinia amylovora

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_017161565.1Erwinia amylovoratype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_017161565.1Erwinia amylovoratype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.9898.4097.99
Best-match type99.9898.4097.99

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna