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ASM1227305v1

Organism name:
Parabacteroides distasonis (CFB group bacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: FDAARGOS_615
BioSample:
SAMN11056330
BioProject:
PRJNA231221
Submitter:
US Food and Drug Administration
Date:
2020/04/12
Assembly type:
na
Assembly level:
Chromosome
Genome representation:
full
RefSeq category:
representative genome
GenBank assembly accession:
GCA_012273055.1 (latest)
RefSeq assembly accession:
GCF_012273055.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
canu v. 1.4
Genome coverage:
967.55x
Sequencing technology:
Pacbio; Illumina

IDs: 6719761 [UID] 18657948 [GenBank] 19791818 [RefSeq]

See Genome Information for Parabacteroides distasonis

Pathogen Detection Resources

There are 1007 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::10/23/2023 02:16:13
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::4,238
CDSs (total)::4,134
Genes (coding)::4,061
CDSs (with protein)::4,061
Genes (RNA)::104
rRNAs::7, 7, 7 (5S, 16S, 23S)
complete rRNAs::7, 7, 7 (5S, 16S, 23S)
tRNAs::81
ncRNAs::2
Pseudo Genes (total)::73
CDSs (without protein)::73
Pseudo Genes (ambiguous residues)::0 of 73
Pseudo Genes (frameshifted)::33 of 73
Pseudo Genes (incomplete)::44 of 73
Pseudo Genes (internal stop)::14 of 73
Pseudo Genes (multiple problems)::15 of 73
CRISPR Arrays::1
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,112,778
Total ungapped length5,112,678
Gaps between scaffolds0
Number of scaffolds2
Scaffold N505,109,992
Scaffold L501
Number of contigs2
Contig N505,109,892
Contig L501
Total number of chromosomes and plasmids2
Number of component sequences (WGS or clone)2

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_012273065.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP050956.1=NZ_CP050956.1
Plasmid unnamed1CP050955.1=NZ_CP050955.1

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All5,112,77825,112,6785,109,99210
Chromosome 5,109,99215,109,8925,109,99210
Plasmid unnamed12,78612,7862,78600

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Parabacteroides distasonisParabacteroides distasonis

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_900445525.1Parabacteroides distasonissuspected-type

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_900445525.1Parabacteroides distasonissuspected-type

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type97.5975.9579.44
Best-match type97.5975.9579.44

ANI result

Taxonomy check statusBest match statusComment
OKspecies-matchna