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ASM1211361v1

Organism name:
Klebsiella pneumoniae (enterobacteria)
Taxonomy check:
OK
Infraspecific name:
Strain: Bckp091
BioSample:
SAMN14486595
BioProject:
PRJNA616311
Submitter:
Nanjing Agricultural University
Date:
2020/04/07
Assembly type:
na
Assembly level:
Complete Genome
Genome representation:
full
GenBank assembly accession:
GCA_012113615.1 (latest)
RefSeq assembly accession:
GCF_012113615.1 (latest)
RefSeq assembly and GenBank assembly identical:
yes
Assembly method:
CANU v. v1.7
Expected final version:
yes
Genome coverage:
181.17x
Sequencing technology:
Complete Genomics

IDs: 6635101 [UID] 18492378 [GenBank] 18543058 [RefSeq]

See Genome Information for Klebsiella pneumoniae

Pathogen Detection Resources

There are 65159 assemblies for this organism

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History (Show revision history)

Comment

The annotation was added by the NCBI Prokaryotic Genome Annotation Pipeline (PGAP). Information about PGAP can be found here: https://www.ncbi.nlm.nih.gov/genome/annotation_prok/

Genome-Annotation-Data

##Genome-Annotation-Data-START##
Annotation Provider::NCBI RefSeq
Annotation Date::11/28/2023 08:10:41
Annotation Pipeline::NCBI Prokaryotic Genome Annotation Pipeline (PGAP)
Annotation Method::Best-placed reference protein set; GeneMarkS-2+
Annotation Software revision::6.6
Features Annotated::Gene; CDS; rRNA; tRNA; ncRNA
Genes (total)::5,215
CDSs (total)::5,092
Genes (coding)::4,976
CDSs (with protein)::4,976
Genes (RNA)::123
rRNAs::9, 8, 8 (5S, 16S, 23S)
complete rRNAs::9, 8, 8 (5S, 16S, 23S)
tRNAs::85
ncRNAs::13
Pseudo Genes (total)::116
CDSs (without protein)::116
Pseudo Genes (ambiguous residues)::0 of 116
Pseudo Genes (frameshifted)::62 of 116
Pseudo Genes (incomplete)::61 of 116
Pseudo Genes (internal stop)::20 of 116
Pseudo Genes (multiple problems)::21 of 116
##Genome-Annotation-Data-END##

Global statistics

Total sequence length5,351,855
Total ungapped length5,351,855
Total number of chromosomes and plasmids4

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Assembly Information

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
Assembly Unit: Primary Assembly (GCF_012113625.1)
Molecule nameGenBank sequenceRefSeq sequence
Chromosome CP050822.1=NZ_CP050822.1
Plasmid pBckp091-1CP050823.1=NZ_CP050823.1
Plasmid pBckp091-2CP050824.1=NZ_CP050824.1
Plasmid pBckp091-3CP050825.1=NZ_CP050825.1

Assembly statistics

MoleculeTotal
Length
All5,351,855
Chromosome 5,187,296
Plasmid pBckp091-1157,903
Plasmid pBckp091-24,678
Plasmid pBckp091-31,978

Assembly QA

Taxonomy Check Data

Declared organism

Organism nameSpecies name
Klebsiella pneumoniaeKlebsiella pneumoniae

Best-matching type-strain assembly for declared species

AssemblyOrganism nameType category
GCA_000788015.1Klebsiella pneumoniae subsp. pneumoniaetype

Best-matching type-strain assembly

AssemblySpecies nameType category
GCA_000788015.1Klebsiella pneumoniaetype

Average Nucleotide Identity (ANI) data

ANIQuery coverageSubject coverage
Declared type99.2491.2485.28
Best-match type99.2491.2485.28

ANI result

Taxonomy check statusBest match statusComment
OKderived-species-matchna